HL_5MC6_118
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAGUCGGUUAG
- Length
- 11 nucleotides
- Bulged bases
- 5MC6|1|n|C|17, 5MC6|1|n|G|17|||A, 5MC6|1|n|G|18, 5MC6|1|n|U|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_118 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.2678
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MC6|1|n|C|13
5MC6|1|n|A|14
5MC6|1|n|G|15
5MC6|1|n|U|16
5MC6|1|n|C|17
5MC6|1|n|G|17|||A
5MC6|1|n|G|18
5MC6|1|n|U|19
5MC6|1|n|U|20
5MC6|1|n|A|21
5MC6|1|n|G|22
Current chains
- Chain n
- P-site tRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain BT
- Eukaryotic translation initiation factor 5A-1
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