HL_5MC6_123
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MC6_123 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1361
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5MC6|1|BR|U|32
5MC6|1|BR|U|33
5MC6|1|BR|C|34
5MC6|1|BR|C|35
5MC6|1|BR|C|36
5MC6|1|BR|G|37
5MC6|1|BR|U|38
5MC6|1|BR|C|39
5MC6|1|BR|C|40
5MC6|1|BR|G|41
5MC6|1|BR|A|42
5MC6|1|BR|U|43
5MC6|1|BR|C|44
5MC6|1|BR|A|45
Current chains
- Chain BR
- 5S ribosomal RNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-A
- Chain BI
- 60S ribosomal protein L5
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
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