HL_5MDY_012
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- ACACGUGGUAU
- Length
- 11 nucleotides
- Bulged bases
- 5MDY|1|1|G|386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MDY_012 not in the Motif Atlas
- Homologous match to HL_5J7L_145
- Geometric discrepancy: 0.0848
- The information below is about HL_5J7L_145
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5MDY|1|1|A|382
5MDY|1|1|C|383
5MDY|1|1|A|384
5MDY|1|1|C|385
5MDY|1|1|G|386
5MDY|1|1|U|387
5MDY|1|1|G|388
5MDY|1|1|G|389
5MDY|1|1|U|390
5MDY|1|1|A|391
5MDY|1|1|U|392
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain X
- 50S ribosomal protein L28
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