HL_5MDY_067

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCUUUAAGG

Length

9 nucleotides

Bulged bases

5MDY|1|1|U|2797, 5MDY|1|1|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDY_067 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.3294

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MDY|1|1|C|2794
5MDY|1|1|C|2795
5MDY|1|1|U|2796
5MDY|1|1|U|2797
5MDY|1|1|U|2798
5MDY|1|1|A|2799
5MDY|1|1|A|2800
5MDY|1|1|G|2801
5MDY|1|1|G|2802

Current chains

Chain 1

23S ribosomal RNA

Nearby chains