HL_5MDZ_012

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5MDZ|1|1|G|386, 5MDZ|1|1|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDZ_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.074

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5MDZ|1|1|A|382
5MDZ|1|1|C|383
5MDZ|1|1|A|384
5MDZ|1|1|C|385
5MDZ|1|1|G|386
5MDZ|1|1|U|387
5MDZ|1|1|G|388
5MDZ|1|1|G|389
5MDZ|1|1|U|390
5MDZ|1|1|A|391
5MDZ|1|1|U|392

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28