HL_5MDZ_029

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDZ_029 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1871

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5MDZ|1|1|C|1092
5MDZ|1|1|G|1093
5MDZ|1|1|U|1094
5MDZ|1|1|A|1095
5MDZ|1|1|A|1096
5MDZ|1|1|U|1097
5MDZ|1|1|A|1098
5MDZ|1|1|G|1099

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain I

50S ribosomal protein L11

Chain f

50S ribosomal protein L36