HL_5MDZ_067

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUUAAGG

Length

9 nucleotides

Bulged bases

5MDZ|1|1|U|2797, 5MDZ|1|1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MDZ_067 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.3278

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MDZ|1|1|C|2794
5MDZ|1|1|C|2795
5MDZ|1|1|U|2796
5MDZ|1|1|U|2797
5MDZ|1|1|U|2798
5MDZ|1|1|A|2799
5MDZ|1|1|A|2800
5MDZ|1|1|G|2801
5MDZ|1|1|G|2802

Current chains

Chain 1

23S ribosomal RNA

Nearby chains