HL_5MEI_006

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

5MEI|1|1|U|210, 5MEI|1|1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_006 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.1219

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5MEI|1|1|C|208
5MEI|1|1|A|209
5MEI|1|1|U|210
5MEI|1|1|A|211
5MEI|1|1|G|212

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 9

60S ribosomal protein L26-A

Chain l

60S ribosomal protein L4-A