HL_5MEI_039

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

5MEI|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_039 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.3531

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5MEI|1|1|C|1759
5MEI|1|1|A|1760
5MEI|1|1|C|1761
5MEI|1|1|C|1762
5MEI|1|1|U|1763
5MEI|1|1|U|1764
5MEI|1|1|U|1765
5MEI|1|1|G|1766

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

60S ribosomal protein L22-A

Chain z

60S ribosomal protein L19-A