HL_5MEI_051

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5MEI|1|1|A|2372, 5MEI|1|1|A|2373, 5MEI|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_051 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0839

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5MEI|1|1|G|2369
5MEI|1|1|G|2370
5MEI|1|1|G|2371
5MEI|1|1|A|2372
5MEI|1|1|A|2373
5MEI|1|1|C|2374
5MEI|1|1|G|2375
5MEI|1|1|G|2376
5MEI|1|1|G|2377
5MEI|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L32

Chain k

60S ribosomal protein L3