HL_5MEI_122
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 5MEI|1|A|A|400, 5MEI|1|A|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MEI_122 not in the Motif Atlas
- Geometric match to HL_4V88_195
- Geometric discrepancy: 0.0762
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5MEI|1|A|C|393
5MEI|1|A|C|394
5MEI|1|A|U|395
5MEI|1|A|G|396
5MEI|1|A|A|397
5MEI|1|A|G|398
5MEI|1|A|A|399
5MEI|1|A|A|400
5MEI|1|A|A|401
5MEI|1|A|C|402
5MEI|1|A|G|403
5MEI|1|A|G|404
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4-A
- Chain H
- 40S ribosomal protein S6-A
- Chain J
- 40S ribosomal protein S8-A
- Chain Z
- 40S ribosomal protein S24-A
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