HL_5MEI_132

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_132 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.1118

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5MEI|1|A|A|900
5MEI|1|A|G|901
5MEI|1|A|G|902
5MEI|1|A|U|903
5MEI|1|A|G|904
5MEI|1|A|A|905
5MEI|1|A|A|906
5MEI|1|A|A|907
5MEI|1|A|U|908
5MEI|1|A|U|909

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S14-B

Chain b

40S ribosomal protein S26-B