HL_5MEI_155
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 5MEI|1|AR|G|218, 5MEI|1|AR|A|219, 5MEI|1|AR|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MEI_155 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.0816
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
5MEI|1|AR|G|216
5MEI|1|AR|U|217
5MEI|1|AR|G|218
5MEI|1|AR|A|219
5MEI|1|AR|G|220
5MEI|1|AR|A|221
5MEI|1|AR|A|222
5MEI|1|AR|U|223
5MEI|1|AR|C|224
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CF
- 60S ribosomal protein L4-A
- Chain DA
- 60S ribosomal protein L26-A
Coloring options: