HL_5MEI_197

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

5MEI|1|AR|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_197 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1344

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MEI|1|AR|G|2253
5MEI|1|AR|U|2254
5MEI|1|AR|A|2255
5MEI|1|AR|A|2256
5MEI|1|AR|C|2257
5MEI|1|AR|U|2258
5MEI|1|AR|A|2259
5MEI|1|AR|U|2260
5MEI|1|AR|G|2261
5MEI|1|AR|A|2262
5MEI|1|AR|C|2263

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain e0

40S ribosomal protein S30-A