HL_5MEI_204
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 5MEI|1|AR|A|2637, 5MEI|1|AR|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MEI_204 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.0665
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
5MEI|1|AR|U|2633
5MEI|1|AR|U|2634
5MEI|1|AR|A|2635
5MEI|1|AR|A|2636
5MEI|1|AR|A|2637
5MEI|1|AR|C|2638
5MEI|1|AR|G|2639
5MEI|1|AR|A|2640
5MEI|1|AR|U|2641
5MEI|1|AR|A|2642
5MEI|1|AR|A|2643
5MEI|1|AR|C|2644
5MEI|1|AR|G|2645
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AS
- 5S ribosomal RNA; 5S rRNA
- Chain CL
- 60S ribosomal protein L10
- Chain CV
- 60S ribosomal protein L21-A
- Chain DD
- 60S ribosomal protein L29
Coloring options: