HL_5MEI_224
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 5MEI|1|AT|A|111, 5MEI|1|AT|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MEI_224 not in the Motif Atlas
- Geometric match to HL_5TBW_075
- Geometric discrepancy: 0.1026
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
5MEI|1|AT|C|108
5MEI|1|AT|A|109
5MEI|1|AT|C|110
5MEI|1|AT|A|111
5MEI|1|AT|U|112
5MEI|1|AT|U|113
5MEI|1|AT|G|114
Current chains
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CZ
- 60S ribosomal protein L25
- Chain DL
- 60S ribosomal protein L37-A
- Chain DN
- 60S ribosomal protein L39
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