HL_5MEI_226

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

5MEI|1|1|U|545, 5MEI|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_226 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.0758

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5MEI|1|1|U|540
5MEI|1|1|U|541
5MEI|1|1|G|542
5MEI|1|1|C|543
5MEI|1|1|C|544
5MEI|1|1|U|545
5MEI|1|1|C|546
5MEI|1|1|G|547
5MEI|1|1|G|548
5MEI|1|1|U|549
5MEI|1|1|A|550
5MEI|1|1|A|551

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 0

60S ribosomal protein L20-A