HL_5MEI_239

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

5MEI|1|AR|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_239 not in the Motif Atlas

Homologous match to HL_8P9A_139

Geometric discrepancy: 0.1303

The information below is about HL_8P9A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5MEI|1|AR|C|1239
5MEI|1|AR|A|1240
5MEI|1|AR|U|1241
5MEI|1|AR|G|1242
5MEI|1|AR|G|1243
5MEI|1|AR|A|1244
5MEI|1|AR|A|1245
5MEI|1|AR|G|1246
5MEI|1|AR|U|1247
5MEI|1|AR|C|1248
5MEI|1|AR|G|1249

Current chains

Chain AR

25S ribosomal RNA

Nearby chains