HL_5MGP_039

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

5MGP|1|A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_039 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.121

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5MGP|1|A|A|1630
5MGP|1|A|G|1631
5MGP|1|A|A|1632
5MGP|1|A|G|1633
5MGP|1|A|A|1634
5MGP|1|A|A|1635
5MGP|1|A|U|1636

Current chains

Chain A

23S ribosomal RNA

Nearby chains