HL_5MLC_029

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_029 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.224

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5MLC|1|A|C|1120
5MLC|1|A|G|1121
5MLC|1|A|U|1122
5MLC|1|A|A|1123
5MLC|1|A|A|1124
5MLC|1|A|U|1125
5MLC|1|A|A|1126
5MLC|1|A|G|1127

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 6

50S ribosomal protein L36, chloroplastic

Chain H

50S ribosomal protein L6, chloroplastic