HL_5MLC_045
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5MLC|1|A|A|1790, 5MLC|1|A|C|1791, 5MLC|1|A|C|1792, 5MLC|1|A|A|1796
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MLC_045 not in the Motif Atlas
- Homologous match to HL_4WF9_043
- Geometric discrepancy: 0.0898
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5MLC|1|A|U|1787
5MLC|1|A|U|1788
5MLC|1|A|U|1789
5MLC|1|A|A|1790
5MLC|1|A|C|1791
5MLC|1|A|C|1792
5MLC|1|A|A|1793
5MLC|1|A|A|1794
5MLC|1|A|A|1795
5MLC|1|A|A|1796
5MLC|1|A|A|1797
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 4
- 50S ribosomal protein L34, chloroplastic
- Chain D
- 50S ribosomal protein L2, chloroplastic
- Chain U
- 50S ribosomal protein L22, chloroplastic
Coloring options: