HL_5MMI_001

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACGAAAU

Length

8 nucleotides

Bulged bases

5MMI|1|A|A|71

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_001 not in the Motif Atlas

Homologous match to HL_4WF9_001

Geometric discrepancy: 0.2544

The information below is about HL_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08550.2

Basepair signature

cWW-F-F-F-cSH

Number of instances in this motif group

3

Unit IDs

5MMI|1|A|G|66
5MMI|1|A|A|67
5MMI|1|A|C|68
5MMI|1|A|G|69
5MMI|1|A|A|70
5MMI|1|A|A|71
5MMI|1|A|A|72
5MMI|1|A|U|73

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L23, chloroplastic

Chain V

plastid ribosomal protein uL24c

Chain Z

plastid ribosomal protein uL29c