HL_5MMI_008

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_008 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2954

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5MMI|1|A|G|260
5MMI|1|A|U|261
5MMI|1|A|G|262
5MMI|1|A|A|263
5MMI|1|A|A|264
5MMI|1|A|A|265
5MMI|1|A|A|266
5MMI|1|A|C|267

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Y

plastid ribosomal protein bL28c