HL_5MMI_009

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGAGUG

Length

7 nucleotides

Bulged bases

5MMI|1|A|U|320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_009 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.3448

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

5MMI|1|A|U|315
5MMI|1|A|G|316
5MMI|1|A|G|317
5MMI|1|A|A|318
5MMI|1|A|G|319
5MMI|1|A|U|320
5MMI|1|A|G|321

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

plastid ribosomal protein uL24c