HL_5MMI_027

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

5MMI|1|A|U|986, 5MMI|1|A|G|989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_027 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1129

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5MMI|1|A|G|983
5MMI|1|A|G|984
5MMI|1|A|A|985
5MMI|1|A|U|986
5MMI|1|A|A|987
5MMI|1|A|A|988
5MMI|1|A|G|989
5MMI|1|A|C|990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein 6, chloroplastic

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16, chloroplastic