HL_5MMI_050

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5MMI|1|A|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_050 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2405

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MMI|1|A|G|1924
5MMI|1|A|U|1925
5MMI|1|A|A|1926
5MMI|1|A|A|1927
5MMI|1|A|C|1928
5MMI|1|A|U|1929
5MMI|1|A|A|1930
5MMI|1|A|U|1931
5MMI|1|A|A|1932
5MMI|1|A|A|1933
5MMI|1|A|C|1934

Current chains

Chain A

23S ribosomal RNA

Nearby chains