HL_5MMI_056

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5MMI|1|A|A|2285, 5MMI|1|A|C|2292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_056 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0968

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5MMI|1|A|C|2281
5MMI|1|A|C|2282
5MMI|1|A|A|2283
5MMI|1|A|A|2284
5MMI|1|A|A|2285
5MMI|1|A|A|2286
5MMI|1|A|G|2287
5MMI|1|A|G|2288
5MMI|1|A|U|2289
5MMI|1|A|A|2290
5MMI|1|A|A|2291
5MMI|1|A|C|2292
5MMI|1|A|G|2293

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L16, chloroplastic

Chain X

plastid ribosomal protein bL27c