HL_5MMI_077

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACGGAGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_077 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.1884

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5MMI|1|A|G|2321
5MMI|1|A|A|2322
5MMI|1|A|C|2323
5MMI|1|A|G|2324
5MMI|1|A|G|2325
5MMI|1|A|A|2326
5MMI|1|A|G|2327
5MMI|1|A|A|2328
5MMI|1|A|U|2329

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

plastid ribosomal protein uL5c