HL_5MRE_007

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGGUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_007 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.1871

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

5MRE|1|A|U|286
5MRE|1|A|G|287
5MRE|1|A|G|288
5MRE|1|A|U|289
5MRE|1|A|G|290
5MRE|1|A|A|291
5MRE|1|A|G|292

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain J

uL15m

Chain S

bL28m

Chain Z

bL35m

Chain bb

Transfer RNA; tRNA