HL_5MRE_033

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

5MRE|1|A|A|1687, 5MRE|1|A|C|1688, 5MRE|1|A|U|1689, 5MRE|1|A|A|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_033 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0788

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5MRE|1|A|U|1684
5MRE|1|A|U|1685
5MRE|1|A|U|1686
5MRE|1|A|A|1687
5MRE|1|A|C|1688
5MRE|1|A|U|1689
5MRE|1|A|A|1690
5MRE|1|A|A|1691
5MRE|1|A|A|1692
5MRE|1|A|A|1693
5MRE|1|A|A|1694

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

uL2m

Chain Y

bL34m