HL_5MRE_052

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGUAGAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_052 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.248

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5MRE|1|A|A|2737
5MRE|1|A|G|2738
5MRE|1|A|U|2739
5MRE|1|A|A|2740
5MRE|1|A|G|2741
5MRE|1|A|A|2742
5MRE|1|A|U|2743
5MRE|1|A|A|2744
5MRE|1|A|U|2745

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

bL36m

Chain F

uL6m

Chain K

uL16m