HL_5MRE_053

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUGUAAAAG

Length

9 nucleotides

Bulged bases

5MRE|1|A|U|2795, 5MRE|1|A|G|2796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_053 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1277

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5MRE|1|A|U|2794
5MRE|1|A|U|2795
5MRE|1|A|G|2796
5MRE|1|A|U|2797
5MRE|1|A|A|2798
5MRE|1|A|A|2799
5MRE|1|A|A|2800
5MRE|1|A|A|2801
5MRE|1|A|G|2802

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 0

bL36m

Chain F

uL6m