HL_5MRE_069

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UCUGAAAUAUA

Length

11 nucleotides

Bulged bases

5MRE|1|aa|U|334, 5MRE|1|aa|U|336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRE_069 not in the Motif Atlas

Geometric match to HL_8C3A_201

Geometric discrepancy: 0.3141

The information below is about HL_8C3A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5MRE|1|aa|U|327
5MRE|1|aa|C|328
5MRE|1|aa|U|329
5MRE|1|aa|G|330
5MRE|1|aa|A|331
5MRE|1|aa|A|332
5MRE|1|aa|A|333
5MRE|1|aa|U|334
5MRE|1|aa|A|335
5MRE|1|aa|U|336
5MRE|1|aa|A|337

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 22

mS41

Chain PP

bS16m