3D structure

PDB id
8C3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases (A, C, G, U)
401G
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84288.1
Basepair signature
cWW-tWH-tWH-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8C3A|1|CM|C|391
8C3A|1|CM|C|392
8C3A|1|CM|U|393
8C3A|1|CM|G|394
8C3A|1|CM|A|395
8C3A|1|CM|G|396
8C3A|1|CM|A|397
8C3A|1|CM|A|398
8C3A|1|CM|A|399
8C3A|1|CM|C|400
8C3A|1|CM|G|401
8C3A|1|CM|G|402

Current chains

Chain CM
18S

Nearby chains

Chain CR
40S ribosomal protein S4
Chain CT
40S ribosomal protein S6
Chain CV
40S ribosomal protein S8
Chain DL
40S ribosomal protein S24

Coloring options:

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