Motif HL_06226.2 Version HL_06226.2 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-7 | 3-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_201 | 8C3A | 0.8147 | 2 | CM | SSU rRNA | C | 391 | C | 392 | U | 393 | G | 394 | A | 395 | G | 396 | A | 397 | A | 399 | C | 400 | G | 402 | cWW | tWH | tWH | ||
| 2 | HL_8P9A_199 | 8P9A | 0.7972 | 2 | sR | SSU rRNA | C | 393 | C | 394 | U | 395 | G | 396 | A | 397 | G | 398 | A | 399 | A | 401 | C | 402 | G | 404 | cWW | tWH | tWH | ||
| 3 | HL_5J7L_029 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | A | 1362 | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | ntWH | ||
| 4 | HL_4LFB_030 | 4LFB | 0.1471 | 2 | A | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | C | 1361|||A | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | tWW | ||
| 5 | HL_6CZR_101 | 6CZR | 0.2585 | 2 | 1a | SSU rRNA | G | 1338 | A | 1339 | U | 1340 | C | 1341 | A | 1342 | G | 1343 | C | 1344 | A | 1346 | G | 1348 | C | 1349 | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGAGAAACGG | 2 |
| GAUCAGCCAUGC | 2 |
| GAUCAGAAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAGAAACG | 2 |
| AUCAGCCAUG | 2 |
| AUCAGAAUG | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.47 | Max 0.94
Coloring options: