HL_5MRF_092

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

AAUUAGUAUGU

Length

11 nucleotides

Bulged bases

5MRF|1|aa|U|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MRF_092 not in the Motif Atlas

Homologous match to HL_5J7L_029

Geometric discrepancy: 0.4079

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MRF|1|aa|A|1425
5MRF|1|aa|A|1426
5MRF|1|aa|U|1427
5MRF|1|aa|U|1428
5MRF|1|aa|A|1429
5MRF|1|aa|G|1430
5MRF|1|aa|U|1431
5MRF|1|aa|A|1432
5MRF|1|aa|U|1433
5MRF|1|aa|G|1434
5MRF|1|aa|U|1435

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain II

uS9m

Chain JJ

uS10m

Chain NN

uS14m

Chain XX

mS33