HL_5MY1_023

3D structure

PDB id

5MY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli expressome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5MY1|1|A|U|1030, 5MY1|1|A|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MY1_023 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3582

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5MY1|1|A|C|1028
5MY1|1|A|U|1029
5MY1|1|A|U|1030
5MY1|1|A|C|1031
5MY1|1|A|G|1032
5MY1|1|A|G|1033

Current chains

Chain A

16S ribosomal RNA

Nearby chains