HL_5NCO_073

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5NCO|1|A|G|386

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NCO_073 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0979

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5NCO|1|A|A|382
5NCO|1|A|C|383
5NCO|1|A|A|384
5NCO|1|A|C|385
5NCO|1|A|G|386
5NCO|1|A|U|387
5NCO|1|A|G|388
5NCO|1|A|G|389
5NCO|1|A|U|390
5NCO|1|A|A|391
5NCO|1|A|U|392

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L28