HL_5ND8_043
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUAUCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5ND8|1|A|A|1807, 5ND8|1|A|U|1808, 5ND8|1|A|C|1809, 5ND8|1|A|A|1813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ND8_043 not in the Motif Atlas
- Homologous match to HL_4WF9_043
- Geometric discrepancy: 0.2063
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
5ND8|1|A|U|1804
5ND8|1|A|U|1805
5ND8|1|A|U|1806
5ND8|1|A|A|1807
5ND8|1|A|U|1808
5ND8|1|A|C|1809
5ND8|1|A|A|1810
5ND8|1|A|A|1811
5ND8|1|A|A|1812
5ND8|1|A|A|1813
5ND8|1|A|A|1814
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain D
- 50S ribosomal protein L2
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