HL_5ND8_094

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5ND8|1|a|G|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND8_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.188

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5ND8|1|a|G|1101
5ND8|1|a|U|1102
5ND8|1|a|U|1103
5ND8|1|a|A|1104
5ND8|1|a|A|1105
5ND8|1|a|G|1106
5ND8|1|a|U|1107
5ND8|1|a|C|1108

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2