HL_5ND9_021

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAUAGG

Length

9 nucleotides

Bulged bases

5ND9|1|A|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ND9_021 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.278

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5ND9|1|A|C|685
5ND9|1|A|U|686
5ND9|1|A|G|687
5ND9|1|A|A|688
5ND9|1|A|A|689
5ND9|1|A|U|690
5ND9|1|A|A|691
5ND9|1|A|G|692
5ND9|1|A|G|693

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L33 2

Chain 7

50S ribosomal protein L35