HL_5NDG_076
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GAUAGUGGC
- Length
- 9 nucleotides
- Bulged bases
- 5NDG|1|2|G|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDG_076 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.133
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
5NDG|1|2|G|330
5NDG|1|2|A|331
5NDG|1|2|U|332
5NDG|1|2|A|333
5NDG|1|2|G|334
5NDG|1|2|U|335
5NDG|1|2|G|336
5NDG|1|2|G|337
5NDG|1|2|C|338
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A
- Chain S8
- 40S ribosomal protein S8-A
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