HL_5NDG_117
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 5NDG|1|5|G|283, 5NDG|1|5|A|284, 5NDG|1|5|A|285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDG_117 not in the Motif Atlas
- Homologous match to HL_5TBW_008
- Geometric discrepancy: 0.0866
- The information below is about HL_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5NDG|1|5|U|278
5NDG|1|5|U|279
5NDG|1|5|U|280
5NDG|1|5|G|281
5NDG|1|5|G|282
5NDG|1|5|G|283
5NDG|1|5|A|284
5NDG|1|5|A|285
5NDG|1|5|U|286
5NDG|1|5|G|287
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain n8
- 60S ribosomal protein L28
- Chain q2
- 60S ribosomal protein L42-A
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