HL_5NDG_133

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5NDG|1|5|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDG_133 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.0857

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5NDG|1|5|C|1076
5NDG|1|5|U|1077
5NDG|1|5|U|1078
5NDG|1|5|A|1079
5NDG|1|5|A|1080
5NDG|1|5|U|1081
5NDG|1|5|U|1082
5NDG|1|5|G|1083

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain n1

60S ribosomal protein L21-A

Chain n9

60S ribosomal protein L29