HL_5NDG_189

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5NDG|1|6|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDG_189 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.098

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5NDG|1|6|G|330
5NDG|1|6|A|331
5NDG|1|6|U|332
5NDG|1|6|A|333
5NDG|1|6|G|334
5NDG|1|6|U|335
5NDG|1|6|G|336
5NDG|1|6|G|337
5NDG|1|6|C|338

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s8

40S ribosomal protein S8-A