HL_5NDJ_049
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UAUUGAAGCA
- Length
- 10 nucleotides
- Bulged bases
- 5NDJ|1|14|C|599
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDJ_049 not in the Motif Atlas
- Geometric match to HL_7RQB_018
- Geometric discrepancy: 0.0578
- The information below is about HL_7RQB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_41998.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 69
Unit IDs
5NDJ|1|14|U|591
5NDJ|1|14|A|592
5NDJ|1|14|U|593
5NDJ|1|14|U|594
5NDJ|1|14|G|595
5NDJ|1|14|A|596
5NDJ|1|14|A|597
5NDJ|1|14|G|598
5NDJ|1|14|C|599
5NDJ|1|14|A|600
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L3
- Chain 35
- 50S ribosomal protein L15
- Chain 95
- 50S ribosomal protein L21
- Chain J5
- 50S ribosomal protein L32
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