HL_5NDJ_152

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

5NDJ|1|1H|C|599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDJ_152 not in the Motif Atlas

Geometric match to HL_7RQB_018

Geometric discrepancy: 0.0468

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5NDJ|1|1H|U|591
5NDJ|1|1H|A|592
5NDJ|1|1H|U|593
5NDJ|1|1H|U|594
5NDJ|1|1H|G|595
5NDJ|1|1H|A|596
5NDJ|1|1H|A|597
5NDJ|1|1H|G|598
5NDJ|1|1H|C|599
5NDJ|1|1H|A|600

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 78

50S ribosomal protein L15

Chain D8

50S ribosomal protein L21

Chain N8

50S ribosomal protein L32