HL_5NDK_008
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CACUGAGACACGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDK_008 not in the Motif Atlas
- Homologous match to HL_5J7L_008
- Geometric discrepancy: 0.0882
- The information below is about HL_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NDK|1|13|C|961
5NDK|1|13|A|962
5NDK|1|13|C|963
5NDK|1|13|U|964
5NDK|1|13|G|965
5NDK|1|13|A|966
5NDK|1|13|G|967
5NDK|1|13|A|968
5NDK|1|13|C|969
5NDK|1|13|A|970
5NDK|1|13|C|971
5NDK|1|13|G|972
5NDK|1|13|G|973
5NDK|1|13|G|974
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 7I
- 30S ribosomal protein S16
- Chain BI
- 30S ribosomal protein S20
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