HL_5NDK_021
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGAAGCAACGCG
- Length
- 12 nucleotides
- Bulged bases
- 5NDK|1|13|G|1594
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDK_021 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.2993
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NDK|1|13|C|1585
5NDK|1|13|G|1586
5NDK|1|13|A|1587
5NDK|1|13|A|1588
5NDK|1|13|G|1589
5NDK|1|13|C|1590
5NDK|1|13|A|1591
5NDK|1|13|A|1592
5NDK|1|13|C|1593
5NDK|1|13|G|1594
5NDK|1|13|C|1595
5NDK|1|13|G|1596
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1I
- 30S ribosomal protein S10
- Chain 4I
- 30S ribosomal protein S13
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain 8E
- 30S ribosomal protein S9
- Chain W1
- Transfer RNA; tRNA
- Chain X1
- Transfer RNA; tRNA
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