HL_5NDK_081
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 5NDK|1|14|U|1980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDK_081 not in the Motif Atlas
- Homologous match to HL_5J7L_182
- Geometric discrepancy: 0.1562
- The information below is about HL_5J7L_182
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20167.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5NDK|1|14|G|1974
5NDK|1|14|G|1975
5NDK|1|14|U|1976
5NDK|1|14|A|1977
5NDK|1|14|A|1978
5NDK|1|14|G|1979
5NDK|1|14|U|1980
5NDK|1|14|U|1981
5NDK|1|14|C|1982
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 25
- 50S ribosomal protein L14
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